Monte Carlo algorithm for simulating reversible aggregation of multisite particles
نویسندگان
چکیده
منابع مشابه
Monte Carlo algorithm for simulating reversible aggregation of multisite particles.
We present an efficient and exact Monte Carlo algorithm to simulate reversible aggregation of particles with dedicated binding sites. This method introduces a data structure of dynamic bond trees to record clusters and sequences of bond formations. The algorithm achieves a constant time cost for processing cluster association and a cost between O(logM) and O(M) for processing bond dissociation ...
متن کاملWavelet Monte Carlo dynamics: A new algorithm for simulating the hydrodynamics of interacting Brownian particles.
We develop a new algorithm for the Brownian dynamics of soft matter systems that evolves time by spatially correlated Monte Carlo moves. The algorithm uses vector wavelets as its basic moves and produces hydrodynamics in the low Reynolds number regime propagated according to the Oseen tensor. When small moves are removed, the correlations closely approximate the Rotne-Prager tensor, itself wide...
متن کاملHybrid, Multiscale Monte Carlo Algorithm for Simulating Stochastic Systems
INTRODUCTION Accurately relating the physiological outcome of a cell to the molecular events, based on an in silico analysis of intracellular networks, requires not only a precise knowledge of the network, but also an appropriate simulation technique. Traditionally, the methods used to temporally evolve intracellular networks have been deterministic in nature. However, deterministic methods can...
متن کاملA continuum, O(N) Monte Carlo algorithm for charged particles.
We introduce a Monte Carlo algorithm for the simulation of charged particles moving in the continuum. Electrostatic interactions are not instantaneous as in conventional approaches, but are mediated by a constrained, diffusing electric field on an interpolating lattice. We discuss the theoretical justifications of the algorithm and show that it efficiently equilibrates model electrolytes and po...
متن کاملMonte Carlo Dose Algorithm
Conventional dose calculation algorithms, such as Pencil Beam are proven effective for tumors located in homogeneous regions with similar tissue consistency such as the brain. However, these algorithms tend to overestimate the dose distribution in extracranial regions such as in the lung and head and neck regions where large inhomogeneities exist. Due to the inconsistencies seen in current calc...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Physical Review E
سال: 2011
ISSN: 1539-3755,1550-2376
DOI: 10.1103/physreve.83.056701